MolNFT v1 · #57988 · protein

Crystal structure of the human wild-type PAD4 protein

3APN · Protein-arginine deiminase type-4: “Crystal structure of the human wild-type PAD4 protein”. X-ray diffraction, 5 pockets (best druggability 0.74). MolNFT v1 #57988 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3APN
Type: protein
Length: 563 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein-arginine deiminase type-4
EC: 3.5.3.15
UniProt: Q9UM07
Pockets: 5 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein-arginine deiminase type-4 (EC 3.5.3.15)	protein	563	18% helix, 38% strand	Q9UM07

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	517	0.74	0.82	54	empty
2	91	0.45	0.80	20	empty
3	59	0.43	0.82	17	empty
4	87	0.40	0.78	17	empty
5	82	0.32	0.74	18	empty

Compared structures

3APN · Crystal structure of the human wild-type PAD4 protein · the same entry in another collection · chain A against A, TM-score 1.00
Q9UM07 · AlphaFold monomer V2.0 prediction for protein-arginine deiminase type-4 (Q9UM07) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UM07
Elsewhere: RCSB PDB 3APN · PDBe 3APN · UniProt Q9UM07

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