MolNFT v1 · #57808 · protein
Crystal structure of human PEX3P in complex with N-terminal PEX19P peptide
3AJB · Peroxisomal biogenesis factor 3: “Crystal structure of human PEX3P in complex with N-terminal PEX19P peptide”. X-ray diffraction, 1 pocket (best druggability 0.33). MolNFT v1 #57808 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3AJB
- Type
- protein
- Length
- 319 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peroxisomal biogenesis factor 3; Peroxisomal biogenesis factor 19
- UniProt
- Q6FGP5, P40855
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 71% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peroxisomal biogenesis factor 3 | protein | 293 | 73% helix, 1% strand | Q6FGP5 |
| B | Peroxisomal biogenesis factor 19 | protein | 26 | 54% helix, 0% strand | P40855 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.33 | 0.78 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 749 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3AJB · Crystal Structure of human Pex3p in complex with N-terminal Pex19p peptide · the same entry in another collection · chain A against A, TM-score 1.00
- P40855 · AlphaFold monomer V2.0 prediction for peroxisomal biogenesis factor 19 (P40855) · a predicted model of the same protein · chain B against A, TM-score 0.43
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6FGP5
- Every structure of UniProt P40855
- Elsewhere: RCSB PDB 3AJB · PDBe 3AJB · UniProt Q6FGP5 · UniProt P40855
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