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MolNFT v1 · #57414 · protein

Crystal structure of the mutt protein in MN(II) bound holo form

3A6V · Mutator mutt protein: “Crystal structure of the mutt protein in MN(II) bound holo form”. X-ray diffraction, 2 ligands (MN, NA). MolNFT v1 #57414 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
3A6V
Type
protein
Length
243 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Mutator mutt protein
EC
3.6.1.-
UniProt
P08337
Ligands
MN, NA

Structure

x-ray diffraction · 2 distinct chains · 22% helix, 46% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AMutator mutt protein (EC 3.6.1.-)protein12221% helix, 46% strandP08337
BMutator mutt protein (EC 3.6.1.-)protein12123% helix, 46% strandP08337

Ligands and binding sites

  • MN · Manganese (II) ion · metal · 4 copies · chains A, B
  • NA · Sodium ion · metal · 2 copies · chains A, B
  • TLA · L(+)-tartaric acid · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 1075 Ų buried · 14 hydrogen bonds · protein-protein

Compared structures

  • 3A6V · Crystal structure of the MutT protein in MN(II) bound holo form · the same entry in another collection · chain A against A, TM-score 1.00
  • P08337 · AlphaFold monomer V2.0 prediction for 8-oxo-dgtp diphosphatase (P08337) · a predicted model of the same protein · chain A against A, TM-score 0.97

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