MolNFT v1 · #57171 · DNA
Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse watson-crick conformation: crystal structures of the WP401-tggccg and WP401-CGG[BR5C]CG complexes
381D · DNA (5'-D(*TP*GP*GP*CP*CP*G)-3'): “Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse watson-crick…”. X-ray diffraction, 1 ligand (DM8). MolNFT v1 #57171 on GenesisL1: 3D structure, binding…
- PDB
- 381D
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*GP*GP*CP*CP*G)-3'); DNA (5'-D(*TP*GP*(G49)P*CP*CP*G)-3')
- Ligands
- DM8
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*TP*GP*GP*CP*CP*G)-3') | dna | 6 | — | — |
| B | DNA (5'-D(*TP*GP*(G49)P*CP*CP*G)-3') | dna | 6 | — | — |
Ligands and binding sites
- DM8 · 2'-bromo-4'-epidaunorubicin · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 283 Ų buried · 28 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, nucleotide modification).
Compared structures
- 381D · Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 381D · PDBe 381D
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