MolNFT v1 · #57170 · DNA

Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse watson-crick conformation: crystal structures of the WP401-tggccg and WP401-CGG[BR5C]CG complexes

380D · DNA (5'-D(*CP*GP*(G49)P*(CBR)P*CP*G)-3'): “Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse watson-crick…”. X-ray diffraction, 1 ligand (DM8). MolNFT v1 #57170 on GenesisL1: 3D structure…

PDB: 380D
Type: DNA
Length: 12 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*(G49)P*(CBR)P*CP*G)-3')
Ligands: DM8

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGP(G49)P(CBR)PCPG)-3')	dna	6	—	—

Ligands and binding sites

DM8 · 2'-bromo-4'-epidaunorubicin · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 298 Å² buried · 22 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 4 modified, 2 covalent (nucleotide modification, covalent ligand).

Compared structures

380D · Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 380D · PDBe 380D

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