MolNFT v1 · #57032 · RNA
Crystal structure of a truncated tRNA, TPHE39A
2ZY6 · Phenylalanyl transfer RNA: “Crystal structure of a truncated tRNA, TPHE39A”. X-ray diffraction, 3 ligands (CA, MG, CL), 3 pockets (best druggability 0.45). MolNFT v1 #57032 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2ZY6
- Type
- RNA
- Length
- 38 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phenylalanyl transfer RNA
- Ligands
- CA, MG, CL
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phenylalanyl transfer RNA | rna | 38 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 7 copies · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 222 | 0.45 | 0.74 | 17 | empty |
| 2 | 92 | 0.34 | 0.75 | 10 | CA |
| 3 | 72 | 0.33 | 0.76 | 12 | CA |
Compared structures
- 2ZY6 · Crystal structure of a truncated tRNA, TPHE39A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2ZY6 · PDBe 2ZY6
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