MolNFT v1 · #56810 · protein

Msreca Q196N form IV

2ZRC · Protein reca: “Msreca Q196N form IV”. X-ray diffraction, 1 ligand (PO4), 3 pockets (best druggability 0.48). MolNFT v1 #56810 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2ZRC
Type: protein
Length: 322 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein reca
EC: 3.4.99.37
UniProt: Q59560
Ligands: PO4
Pockets: 3 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein reca (EC 3.4.99.37)	protein	322	36% helix, 23% strand	Q59560

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A
GOL · Glycerol · additive · chains A
PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	179	0.48	0.76	22	empty
2	144	0.43	0.75	25	PO4
3	126	0.43	0.76	22	empty

Compared structures

2ZRC · MsRecA Q196N Form IV · the same entry in another collection · chain A against A, TM-score 1.00
Q59560 · AlphaFold monomer V2.0 prediction for protein reca (Q59560) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q59560
Elsewhere: RCSB PDB 2ZRC · PDBe 2ZRC · UniProt Q59560

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