MolNFT v1 · #56806 · protein
Crystal structure of modified serine racemase complexed with serine
2ZR8 · Uncharacterized protein C320.14: “Crystal structure of modified serine racemase complexed with serine”. X-ray diffraction, 3 ligands (PDD, SER, MG), 1 pocket (best druggability 0.80). MolNFT v1 #56806 on GenesisL1: 3D structure…
- PDB
- 2ZR8
- Type
- protein
- Length
- 319 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein C320.14
- EC
- 5.1.1.18
- UniProt
- O59791
- Ligands
- PDD, SER, MG
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein C320.14 (EC 5.1.1.18) | protein | 319 | 51% helix, 16% strand | O59791 |
Ligands and binding sites
- PDD · N-(5'-phosphopyridoxyl)-D-alanine · ligand · chains A
- SER · Serine · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 178 | 0.80 | 0.95 | 40 | PDD, SER |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O59791
- Elsewhere: RCSB PDB 2ZR8 · PDBe 2ZR8 · UniProt O59791
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