MolNFT v1 · #56329 · protein
Crystal structure of ribosomal protein L11 methyltransferase from thermus thermophilus in complex with S-adenosyl-ornithine
2ZBR: “Crystal structure of ribosomal protein L11 methyltransferase from thermus thermophilus in complex with…”. X-ray diffraction, 1 ligand (SFG), 3 pockets (best druggability 0.49). MolNFT v1 #56329 on GenesisL1: 3D structure, binding…
- PDB
- 2ZBR
- Type
- protein
- Length
- 248 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal protein L11 methyltransferase
- EC
- 2.1.1.-
- UniProt
- Q84BQ9
- Ligands
- SFG
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | protein | 248 | 37% helix, 33% strand | Q84BQ9 |
Ligands and binding sites
- SFG · Sinefungin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.49 | 0.78 | 17 | empty |
| 2 | 89 | 0.44 | 0.80 | 18 | empty |
| 3 | 63 | 0.27 | 0.73 | 15 | empty |
Compared structures
- 2ZBR · Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q84BQ9 · AlphaFold monomer V2.0 prediction for ribosomal protein L11 methyltransferase (Q84BQ9) · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84BQ9
- Elsewhere: RCSB PDB 2ZBR · PDBe 2ZBR · UniProt Q84BQ9
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