MolNFT v1 · #56225 · protein

Crystal structure of the staphylococcal superantigen-like protein SSL5 at pH 4.6 complexed with sialyl lewis X

2Z8L · Exotoxin 3: “Crystal structure of the staphylococcal superantigen-like protein SSL5 at pH 4.6 complexed with sialyl lewis X”. X-ray diffraction, 5 ligands (NAG, GAL, SIA), 1 pocket (best druggability 0.41). MolNFT v1 #56225 on…

PDB: 2Z8L
Type: protein
Length: 192 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Exotoxin 3
UniProt: Q9ZFS6
Ligands: NAG, GAL, SIA, FUC, PO4
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Exotoxin 3	protein	192	17% helix, 46% strand	Q9ZFS6

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
GAL · beta-D-galactopyranose · sugar · chains A
SIA · N-acetyl-alpha-neuraminic acid · sugar · chains A
FUC · alpha-L-fucopyranose · sugar · chains A
PO4 · Phosphate ion · ion · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.41	0.82	12	GOL

Compared structures

2Z8L · Crystal Structure of the Staphylococcal superantigen-like protein SSL5 at pH 4.6… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZFS6
Elsewhere: RCSB PDB 2Z8L · PDBe 2Z8L · UniProt Q9ZFS6

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