MolNFT v1 · #56166 · protein

Crystal structure of the UFC1, UFM1 conjugating enzyme 1

2Z6O · UFM1-conjugating enzyme 1: “Crystal structure of the UFC1, UFM1 conjugating enzyme 1”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.48). MolNFT v1 #56166 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2Z6O
Type: protein
Length: 166 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UFM1-conjugating enzyme 1
EC: 6.3.2.19
UniProt: Q9Y3C8
Ligands: MG
Pockets: 3 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UFM1-conjugating enzyme 1 (EC 6.3.2.19)	protein	166	40% helix, 19% strand	Q9Y3C8

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.48	0.82	19	empty
2	89	0.37	0.76	18	empty
3	91	0.32	0.73	22	empty

Compared structures

2Z6O · Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1 · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y3C8 · AlphaFold monomer V2.0 prediction for ubiquitin-fold modifier- conjugating enzyme 1… · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y3C8
Elsewhere: RCSB PDB 2Z6O · PDBe 2Z6O · UniProt Q9Y3C8

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.