MolNFT v1 · #56158 · protein

Crystal structure of neat domain from staphylococcus aureus in complex with heme

2Z6F · Iron-regulated surface determinant protein H: “Crystal structure of neat domain from staphylococcus aureus in complex with heme”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.49). MolNFT v1 #56158 on GenesisL1…

PDB: 2Z6F
Type: protein
Length: 112 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Iron-regulated surface determinant protein H
UniProt: Q931P4
Ligands: HEM
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 62% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Iron-regulated surface determinant protein H	protein	112	12% helix, 62% strand	Q931P4

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.49	0.83	18	HEM

Compared structures

2Z6F · Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme · the same entry in another collection · chain A against A, TM-score 1.00
Q931P4 · AlphaFold monomer V2.0 prediction for iron-regulated surface determinant protein H… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q931P4
Elsewhere: RCSB PDB 2Z6F · PDBe 2Z6F · UniProt Q931P4

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