Research workbench

Crystal structure of neat domain from staphylococcus aureus in complex with heme

Analyse Crystal structure of neat domain from staphylococcus aureus in complex with heme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2Z6F
Type: protein
Length: 112 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Iron-regulated surface determinant protein H
UniProt: Q931P4
Ligands: HEM
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 62% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Iron-regulated surface determinant protein H	protein	112	12% helix, 62% strand	Q931P4

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.49	0.83	18	HEM

Compared structures

2Z6F · Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme · the same entry in another collection · chain A against A, TM-score 1.00
Q931P4 · AlphaFold monomer V2.0 prediction for iron-regulated surface determinant protein H… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q931P4
Elsewhere: RCSB PDB 2Z6F · PDBe 2Z6F · UniProt Q931P4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.