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MolNFT v1 · #56039 · protein

Human WEE1 kinase complexed with inhibitor PF0335770

2Z2W · WEE1-like protein kinase: “Human WEE1 kinase complexed with inhibitor PF0335770”. X-ray diffraction, 2 ligands (770, CL), 2 pockets (best druggability 0.62). MolNFT v1 #56039 on GenesisL1: 3D structure, binding sites and pockets in…

PDB
2Z2W
Type
protein
Length
261 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
WEE1-like protein kinase
EC
2.7.10.2
UniProt
P30291
Ligands
770, CL
Pockets
2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 19% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AWEE1-like protein kinase (EC 2.7.10.2)protein26138% helix, 19% strandP30291

Ligands and binding sites

  • 770 · N-[4-(2-chlorophenyl)-1,3-dioxo-1,2,3,6-tetrahydropyrrolo[3,4-c]carbazol-9-yl]formamide · ligand · chains A
  • CL · Chloride ion · ion · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13380.620.7939770
2960.390.7615CL

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

  • 2Z2W · Human Wee1 kinase complexed with inhibitor PF0335770 · the same entry in another collection · chain A against A, TM-score 1.00
  • P30291 · AlphaFold monomer V2.0 prediction for WEE1-like protein kinase (P30291) · a predicted model of the same protein · chain A against A, TM-score 0.97

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