MolNFT v1 · #56026 · DNA
NMR structure of the iq-modified dodecamer CTCG[IQ]GCGCCATC
2Z2H · DNA (5'-D(*DCP*DTP*DCP*DGP*DGP*DCP*DGP*DCP*DCP*DAP*DTP*DC)…: “NMR structure of the iq-modified dodecamer CTCG[IQ]GCGCCATC”. Solution nmr, 1 ligand (GIQ). MolNFT v1 #56026 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2Z2H
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*DCP*DTP*DCP*DGP*DGP*DCP*DGP*DCP*DCP*DAP*DTP*DC)- 3'); DNA…
- Ligands
- GIQ
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*DCP*DTP*DCP*DGP*DGP*DCP*DGP*DCP*DCP*DAP*DTP*DC)- 3') | dna | 12 | — | — |
| B | DNA (5'-D(*DGP*DAP*DTP*DGP*DGP*DCP*DGP*DCP*DCP*DGP*DAP*DG)- 3') | dna | 12 | — | — |
Ligands and binding sites
- GIQ · 3-methyl-3H-imidazo[4,5-f]quinolin-2-amine · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 551 Ų buried · 71 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 2Z2H · NMR Structure of the IQ-modified Dodecamer CTCG[IQ]GCGCCATC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2Z2H · PDBe 2Z2H
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.