MolNFT v1 · #55958 · protein
Crystal structure of uncharacterized conserved protein from thermus thermophilus HB8
2Z0J · Putative uncharacterized protein TTHA1438: “Crystal structure of uncharacterized conserved protein from thermus thermophilus HB8”. X-ray diffraction, 1 ligand (CA), 20 pockets (best druggability 0.69). MolNFT v1 #55958 on GenesisL1…
- PDB
- 2Z0J
- Type
- protein
- Length
- 1,892 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein TTHA1438
- UniProt
- Q5SID6
- Ligands
- CA
- Pockets
- 20 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G | Putative uncharacterized protein TTHA1438 | protein | 237 | 37% helix, 23% strand | Q5SID6 |
| H | Putative uncharacterized protein TTHA1438 | protein | 233 | 39% helix, 21% strand | Q5SID6 |
Ligands and binding sites
- CA · Calcium ion · metal · 9 copies · chains A, B, C, D, E, F, G, H
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 596 | 0.69 | 0.78 | 67 | CA |
| 2 | 247 | 0.65 | 0.83 | 30 | empty |
| 3 | 414 | 0.64 | 0.78 | 45 | CA |
| 4 | 368 | 0.62 | 0.78 | 50 | CA, MES |
| 5 | 374 | 0.62 | 0.78 | 36 | CA |
Interfaces
9 interfaces between chains.
- E–F · 1070 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 1035 Ų buried · 11 hydrogen bonds · protein-protein
- G–H · 1012 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 1003 Ų buried · 10 hydrogen bonds · protein-protein
- E–G · 574 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 2Z0J · Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 · the same entry in another collection · chain H against H, TM-score 1.00
- Q5SID6 · AlphaFold monomer V2.0 prediction for probable 2-phosphosulfolactate phosphatase (Q5SID6) · a predicted model of the same protein · chain D against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SID6
- Elsewhere: RCSB PDB 2Z0J · PDBe 2Z0J · UniProt Q5SID6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.