MolNFT v1 · #5558 · protein
Cadmium-substituted bovine pacreatic carboxypeptidase a (alfa-form) at pH 5.5 and 2 mm chloride in monoclinic crystal form.
1ELM: “Cadmium-substituted bovine pacreatic carboxypeptidase a (alfa-form) at pH 5.5 and 2 mm chloride in monoclinic…”. X-ray diffraction, 1 ligand (CD), 1 pocket (best druggability 0.60). MolNFT v1 #5558 on GenesisL1: 3D structure…
- PDB
- 1ELM
- Type
- protein
- Length
- 305 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carboxypeptidase a
- EC
- 3.4.17.1
- UniProt
- P00730
- Ligands
- CD
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P | Carboxypeptidase a (EC 3.4.17.1) | protein | 305 | 39% helix, 18% strand | P00730 |
Ligands and binding sites
- CD · Cadmium ion · metal · 2 copies · chains P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 176 | 0.60 | 0.83 | 28 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1ELM · Cadmium-substituted bovine pacreatic carboxypeptidase a (alfa-form) at pH 5.5 and 2 mm… · the same entry in another collection · chain P against P, TM-score 1.00
- P00730 · AlphaFold monomer V2.0 prediction for carboxypeptidase A1 (P00730) · a predicted model of the same protein · chain P against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00730
- Elsewhere: RCSB PDB 1ELM · PDBe 1ELM · UniProt P00730
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