MolNFT v1 · #55316 · protein
Methanobactin MB4
2YGJ: “Methanobactin MB4”. X-ray diffraction, 4 ligands (HM9, HM8, NA). MolNFT v1 #55316 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2YGJ
- Type
- protein
- Length
- 4 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methanobactin MB4
- Ligands
- HM9, HM8, NA, CU
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methanobactin MB4 | protein | 4 | 0% helix, 0% strand | — |
Ligands and binding sites
- HM9 · 6-(3-carbamimidamidopropyl)-3,5-dihydroxypyrazine-2-carbothioic S-acid · ligand · chains A
- HM8 · 2-[(1S,2R)-1-amino-2-(sulfooxy)propyl]-5-hydroxy-1,3-oxazole-4-carbothioic O-acid · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- CU · Copper (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 covalent (covalent ligand).
Compared structures
- 2YGJ · Methanobactin MB4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2YGJ · PDBe 2YGJ
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