MolNFT v1 · #55221 · protein
Thermostabilised human A2A receptor with adenosine bound
2YDO · Adenosine receptor A2A: “Thermostabilised human A2A receptor with adenosine bound”. X-ray diffraction, 2 ligands (SOG, ADN), 3 pockets (best druggability 0.74). MolNFT v1 #55221 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 2YDO
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenosine receptor A2A
- UniProt
- P29274
- Ligands
- SOG, ADN
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 82% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenosine receptor A2A | protein | 309 | 82% helix, 1% strand | P29274 |
Ligands and binding sites
- SOG · octyl 1-thio-beta-D-glucopyranoside · ligand · 2 copies · chains A
- ADN · Adenosine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 262 | 0.74 | 0.87 | 37 | ADN |
| 2 | 170 | 0.47 | 0.76 | 25 | empty |
| 3 | 75 | 0.35 | 0.75 | 16 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29274
- Elsewhere: RCSB PDB 2YDO · PDBe 2YDO · UniProt P29274
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