MolNFT v1 · #54428 · protein

Crystal structure of flavoprotein nrdi from bacillus anthracis in the oxidised form

2XOD · Nrdi protein: “Crystal structure of flavoprotein nrdi from bacillus anthracis in the oxidised form”. X-ray diffraction, 2 ligands (FMN, ZN), 1 pocket (best druggability 0.39). MolNFT v1 #54428 on GenesisL1: 3D structure, binding…

PDB: 2XOD
Type: protein
Length: 118 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nrdi protein
UniProt: Q81TB7
Ligands: FMN, ZN
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nrdi protein	protein	118	44% helix, 24% strand	Q81TB7

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A
ZN · Zinc ion · metal · chains A
CAC · Cacodylate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.39	0.78	20	FMN

Compared structures

2XOD · Crystal structure of flavoprotein NrdI from Bacillus anthracis in the oxidised form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q81TB7
Elsewhere: RCSB PDB 2XOD · PDBe 2XOD · UniProt Q81TB7

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