Research workbench
Crystal structure of flavoprotein nrdi from bacillus anthracis in the oxidised form
Analyse Crystal structure of flavoprotein nrdi from bacillus anthracis in the oxidised… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XOD
- Type
- protein
- Length
- 118 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nrdi protein
- UniProt
- Q81TB7
- Ligands
- FMN, ZN
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nrdi protein | protein | 118 | 44% helix, 24% strand | Q81TB7 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- ZN · Zinc ion · metal · chains A
- CAC · Cacodylate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.39 | 0.78 | 20 | FMN |
Compared structures
- 2XOD · Crystal structure of flavoprotein NrdI from Bacillus anthracis in the oxidised form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81TB7
- Elsewhere: RCSB PDB 2XOD · PDBe 2XOD · UniProt Q81TB7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.