MolNFT v1 · #54418 · RNA
Xpt-pbux C74U riboswitch from B. subtilis bound to N6-methyladenine
2XO1 · Guanine riboswitch: “Xpt-pbux C74U riboswitch from B. subtilis bound to N6-methyladenine”. X-ray diffraction, 3 ligands (NCO, N6M, K), 2 pockets (best druggability 0.72). MolNFT v1 #54418 on GenesisL1: 3D structure, binding sites…
- PDB
- 2XO1
- Type
- RNA
- Length
- 64 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Guanine riboswitch
- Ligands
- NCO, N6M, K
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Guanine riboswitch | rna | 64 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 7 copies · chains A
- N6M · N-methyl-9H-purin-6-amine · ligand · chains A
- K · Potassium ion · metal · 3 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 872 | 0.72 | 0.78 | 38 | NCO, ACT, K |
| 2 | 118 | 0.41 | 0.77 | 16 | N6M |
Compared structures
- 2XO1 · xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2XO1 · PDBe 2XO1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.