MolNFT v1 · #54245 · protein

Protein kinase pim-1 in complex with fragment-4 from crystallographic fragment screen

2XJ0 · Proto-oncogene SERINE/THREONINE protein kinase pim-1: “Protein kinase pim-1 in complex with fragment-4 from crystallographic fragment screen”. X-ray diffraction, 1 ligand (XJ0), 2 pockets (best druggability 0.72). MolNFT v1 #54245…

PDB: 2XJ0
Type: protein
Length: 274 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Proto-oncogene SERINE/THREONINE protein kinase pim-1
EC: 2.7.1.37, 2.7.11.1
UniProt: P11309
Ligands: XJ0
Pockets: 2 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Proto-oncogene SERINE/THREONINE protein kinase pim-1 (EC 2.7.1.37, 2.7.11.1)	protein	274	37% helix, 20% strand	P11309

Ligands and binding sites

XJ0 · (E)-3-(2-amino-pyridine-5YL)-acrylic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.72	0.99	18	empty
2	317	0.68	0.82	46	XJ0

Compared structures

2XJ0 · Protein kinase Pim-1 in complex with fragment-4 from crystallographic fragment screen · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11309
Elsewhere: RCSB PDB 2XJ0 · PDBe 2XJ0 · UniProt P11309

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