MolNFT v1 · #54126 · protein
VCBM60 in complex with cellobiose
2XFD · Carbohydrate binding module: “VCBM60 in complex with cellobiose”. X-ray diffraction, 2 ligands (BGC, CA). MolNFT v1 #54126 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2XFD
- Type
- protein
- Length
- 109 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbohydrate binding module
- UniProt
- D7GNB4
- Ligands
- BGC, CA
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carbohydrate binding module | protein | 109 | 3% helix, 54% strand | D7GNB4 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2XFD · vCBM60 in complex with cellobiose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D7GNB4
- Elsewhere: RCSB PDB 2XFD · PDBe 2XFD · UniProt D7GNB4
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