MolNFT v1 · #53253 · protein

Crystal structure of the C-terminal domain of streptococcus gordonii surface protein sspb

2WOY · Agglutinin receptor: “Crystal structure of the C-terminal domain of streptococcus gordonii surface protein sspb”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.30). MolNFT v1 #53253 on GenesisL1: 3D structure…

PDB: 2WOY
Type: protein
Length: 333 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Agglutinin receptor
UniProt: P16952
Ligands: CA
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Agglutinin receptor	protein	333	12% helix, 44% strand	P16952

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.30	0.74	12	empty

Modifications

Observed in the structure: 4 modified, 1 isopeptide (engineered, isopeptide).

Compared structures

2WOY · Crystal structure of the C-terminal domain of Streptococcus gordonii surface protein SspB · the same entry in another collection · chain A against A, TM-score 1.00
P16952 · AlphaFold monomer V2.0 prediction for agglutinin receptor (P16952) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P16952
Elsewhere: RCSB PDB 2WOY · PDBe 2WOY · UniProt P16952

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