MolNFT v1 · #53244 · protein

Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with arginine

2WOP: “Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with arginine”. X-ray diffraction, 1 ligand (ARG), 3 pockets (best druggability 0.77). MolNFT v1 #53244 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2WOP
Type: protein
Length: 554 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Clavulanic acid biosynthesis oligopeptide binding protein 2
UniProt: Q8KRB4
Ligands: ARG
Pockets: 3 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Clavulanic acid biosynthesis oligopeptide binding protein 2	protein	554	31% helix, 19% strand	Q8KRB4

Ligands and binding sites

ARG · Arginine · ligand · chains A
GOL · Glycerol · additive · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1027	0.77	0.79	96	ARG, GOL, ACT
2	152	0.47	0.77	30	empty
3	72	0.37	0.77	23	empty

Compared structures

2WOP · Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with arginine · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8KRB4
Elsewhere: RCSB PDB 2WOP · PDBe 2WOP · UniProt Q8KRB4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.