MolNFT v1 · #53096 · protein

Nostoc punctiforme debranching enzyme (NPDE)(NATIVE form)

2WKG · Alpha amylase, catalytic region: “Nostoc punctiforme debranching enzyme (NPDE)(NATIVE form)”. X-ray diffraction, 3 pockets (best druggability 0.58). MolNFT v1 #53096 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2WKG
Type: protein
Length: 486 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha amylase, catalytic region
EC: 3.2.1.54
UniProt: B2IUW9
Pockets: 3 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alpha amylase, catalytic region (EC 3.2.1.54)	protein	486	31% helix, 20% strand	B2IUW9

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	323	0.58	0.77	35	empty
2	56	0.36	0.79	18	empty
3	70	0.34	0.76	18	empty

Compared structures

2WKG · Nostoc punctiforme Debranching Enzyme (NPDE)(Native form) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2IUW9
Elsewhere: RCSB PDB 2WKG · PDBe 2WKG · UniProt B2IUW9

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