Research workbench
Nostoc punctiforme debranching enzyme (NPDE)(NATIVE form)
Analyse Nostoc punctiforme debranching enzyme (NPDE)(NATIVE form) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2WKG
- Type
- protein
- Length
- 486 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha amylase, catalytic region
- EC
- 3.2.1.54
- UniProt
- B2IUW9
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha amylase, catalytic region (EC 3.2.1.54) | protein | 486 | 31% helix, 20% strand | B2IUW9 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 323 | 0.58 | 0.77 | 35 | empty |
| 2 | 56 | 0.36 | 0.79 | 18 | empty |
| 3 | 70 | 0.34 | 0.76 | 18 | empty |
Compared structures
- 2WKG · Nostoc punctiforme Debranching Enzyme (NPDE)(Native form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2IUW9
- Elsewhere: RCSB PDB 2WKG · PDBe 2WKG · UniProt B2IUW9
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