MolNFT v1 · #53058 · protein
Crystal structure of the tyrosine phosphatase CPS4B from steptococcus pneumoniae TIGR4.
2WJD · Tyrosine-protein phosphatase cpsb: “Crystal structure of the tyrosine phosphatase CPS4B from steptococcus pneumoniae TIGR4.”. X-ray diffraction, 3 ligands (MN, SM, SO4), 2 pockets (best druggability 0.49). MolNFT v1 #53058 on…
- PDB
- 2WJD
- Type
- protein
- Length
- 244 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein phosphatase cpsb
- EC
- 3.1.3.48
- UniProt
- Q9AHD4
- Ligands
- MN, SM, SO4
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein phosphatase cpsb (EC 3.1.3.48) | protein | 244 | 46% helix, 15% strand | Q9AHD4 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 3 copies · chains A
- SM · Samarium (III) ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 196 | 0.49 | 0.76 | 31 | MN |
| 2 | 60 | 0.36 | 0.79 | 16 | empty |
Compared structures
- 2WJD · Crystal structure of the tyrosine phosphatase Cps4B from Steptococcus pneumoniae TIGR4. · the same entry in another collection · chain A against A, TM-score 1.00
- Q9AHD4 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase cpsb (Q9AHD4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AHD4
- Elsewhere: RCSB PDB 2WJD · PDBe 2WJD · UniProt Q9AHD4
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