MolNFT v1 · #52980 · protein

Human P53 core domain mutant M133L-V203A-Y236F-N239Y-T253I-N268D

2WGX · Cellular tumor antigen P53: “Human P53 core domain mutant M133L-V203A-Y236F-N239Y-T253I-N268D”. X-ray diffraction, 1 ligand (ZN), 4 pockets (best druggability 0.67). MolNFT v1 #52980 on GenesisL1: 3D structure, binding sites and…

PDB: 2WGX
Type: protein
Length: 389 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cellular tumor antigen P53
UniProt: P04637
Ligands: ZN
Pockets: 4 · best druggability 0.67

Structure

x-ray diffraction · 2 distinct chains · 8% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cellular tumor antigen P53	protein	195	9% helix, 33% strand	P04637
B	Cellular tumor antigen P53	protein	194	8% helix, 34% strand	P04637

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	544	0.67	0.77	51	empty
2	126	0.39	0.74	20	empty
3	115	0.37	0.74	20	empty
4	58	0.31	0.76	18	empty

Interfaces

1 interface between chains.

A–B · 478 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

2WGX · Human P53 core domain mutant M133L-V203A-Y236F-N239Y-T253I-N268D · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04637
Elsewhere: RCSB PDB 2WGX · PDBe 2WGX · UniProt P04637

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