MolNFT v1 · #52956 · protein
Structure of oryza sativa (rice) PLA2
2WG7 · Putative phospholipase A2: “Structure of oryza sativa (rice) PLA2”. X-ray diffraction, 2 ligands (CA, NA), 2 pockets (best druggability 0.70). MolNFT v1 #52956 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2WG7
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative phospholipase A2
- EC
- 3.1.1.4
- UniProt
- Q9XG81
- Ligands
- CA, NA
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative phospholipase A2 (EC 3.1.1.4) | protein | 121 | 44% helix, 7% strand | Q9XG81 |
| B | Putative phospholipase A2 (EC 3.1.1.4) | protein | 119 | 45% helix, 8% strand | Q9XG81 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 417 | 0.70 | 0.81 | 69 | empty |
| 2 | 365 | 0.61 | 0.77 | 35 | empty |
Interfaces
1 interface between chains.
- A–B · 1037 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9XG81
- Elsewhere: RCSB PDB 2WG7 · PDBe 2WG7 · UniProt Q9XG81
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