MolNFT v1 · #52825 · protein
Crystal structure of the G2P (large terminase) nuclease domain from the bacteriophage SPP1 with bound mn
2WC9 · Terminase large subunit: “Crystal structure of the G2P (large terminase) nuclease domain from the bacteriophage SPP1 with bound mn”. X-ray diffraction, 2 ligands (MN, SO4), 1 pocket (best druggability 0.44). MolNFT v1 #52825 on…
- PDB
- 2WC9
- Type
- protein
- Length
- 177 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Terminase large subunit
- UniProt
- P54308
- Ligands
- MN, SO4
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Terminase large subunit | protein | 177 | 32% helix, 27% strand | P54308 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 138 | 0.44 | 0.77 | 31 | MN |
Modifications
Observed in the structure: 1 modified (engineered).
Compared structures
- 2WC9 · Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54308
- Elsewhere: RCSB PDB 2WC9 · PDBe 2WC9 · UniProt P54308
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