Research workbench
Crystal structure of the G2P (large terminase) nuclease domain from the bacteriophage SPP1 with bound mn
Analyse Crystal structure of the G2P (large terminase) nuclease domain from the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2WC9
- Type
- protein
- Length
- 177 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Terminase large subunit
- UniProt
- P54308
- Ligands
- MN, SO4
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Terminase large subunit | protein | 177 | 32% helix, 27% strand | P54308 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 138 | 0.44 | 0.77 | 31 | MN |
Modifications
Observed in the structure: 1 modified (engineered).
Compared structures
- 2WC9 · Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54308
- Elsewhere: RCSB PDB 2WC9 · PDBe 2WC9 · UniProt P54308
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