MolNFT v1 · #52821 · protein

Structure of bmori GOBP2 (general odorant binding protein 2)

2WC5 · General odorant-binding protein 1: “Structure of bmori GOBP2 (general odorant binding protein 2)”. X-ray diffraction, 2 ligands (BOM, MG), 2 pockets (best druggability 0.85). MolNFT v1 #52821 on GenesisL1: 3D structure, binding…

PDB: 2WC5
Type: protein
Length: 141 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: General odorant-binding protein 1
UniProt: P34170
Ligands: BOM, MG
Pockets: 2 · best druggability 0.85

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	General odorant-binding protein 1	protein	141	65% helix, 1% strand	P34170

Ligands and binding sites

BOM · Hexadeca-10,12-dien-1-ol · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	191	0.85	0.98	24	BOM
2	71	0.35	0.76	18	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

2WC5 · Structure of BMori GOBP2 (General Odorant Binding Protein 2) · the same entry in another collection · chain A against A, TM-score 1.00
P34170 · AlphaFold monomer V2.0 prediction for general odorant-binding protein 2 (P34170) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P34170
Elsewhere: RCSB PDB 2WC5 · PDBe 2WC5 · UniProt P34170

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