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Ligand · BOM

BOM · Hexadeca-10,12-dien-1-ol

BOM, Hexadeca-10,12-dien-1-ol (C16 H30 O, 238.4 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
BOM
Formula
C16 H30 O
Class
ligand
Structures
6
PDB entries
3

Binding sites

BOM in 6 structures; the first of them:

  • 1DQE · Bombyx mori pheromone binding protein · BOM A300 · binds LEU8, SER9, PHE12, PHE36, TRP37, ILE52, MET53, SER56 and 11 more
  • 2WC5 · Structure of BMori GOBP2 (General Odorant Binding Protein 2) · BOM A1143 · binds VAL8, THR9, PHE12, PHE33, PHE36, TRP37, ILE52, MET62 and 12 more
  • 2WC6 · Structure of BMori GOBP2 (General Odorant Binding Protein 2) with bombykol and water to… · BOM A1143 · binds MET5, VAL8, THR9, PHE12, PHE33, PHE36, ILE52, MET62 and 12 more
  • 1DQE · Bombyx mori pheromone binding protein · BOM A300 · binds LEU8, SER9, PHE12, PHE36, TRP37, ILE52, MET53, SER56 and 11 more
  • 2WC5 · Structure of bmori GOBP2 (general odorant binding protein 2) · BOM A1143 · binds VAL8, THR9, PHE12, PHE33, PHE36, TRP37, ILE52, MET62 and 12 more
  • 2WC6 · Structure of bmori GOBP2 (general odorant binding protein 2) with bombykol and water to… · BOM A1143 · binds MET5, VAL8, THR9, PHE12, PHE33, PHE36, ILE52, MET62 and 12 more

Residues it binds most

PHE 8, MET 8, VAL 8, ILE 8, LEU 4, ALA 8, SER 4, ARG 4, THR 6, TRP 6 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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