MolNFT v1 · #52722 · protein
Crystal structure of CDK4 in complex with a D-type cyclin
2W99 · G1/S-specific cyclin-D1: “Crystal structure of CDK4 in complex with a D-type cyclin”. X-ray diffraction, 7 pockets (best druggability 0.71). MolNFT v1 #52722 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2W99
- Type
- protein
- Length
- 537 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- G1/S-specific cyclin-D1; Cell division protein kinase 4
- EC
- 2.7.11.22
- UniProt
- P24385, P11802
- Pockets
- 7 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | G1/S-specific cyclin-D1 | protein | 246 | 70% helix, 0% strand | P24385 |
| B | Cell division protein kinase 4 (EC 2.7.11.22) | protein | 291 | 27% helix, 14% strand | P11802 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 374 | 0.71 | 0.83 | 58 | empty |
| 2 | 118 | 0.47 | 0.79 | 21 | empty |
| 3 | 154 | 0.45 | 0.76 | 27 | empty |
| 4 | 55 | 0.44 | 0.83 | 17 | empty |
| 5 | 97 | 0.38 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1107 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 2W99 · Crystal Structure of CDK4 in complex with a D-type cyclin · the same entry in another collection · chain A against A, TM-score 1.00
- P24385 · AlphaFold monomer V2.0 prediction for G1/S-specific cyclin-D1 (P24385) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P11802 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 4 (P11802) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24385
- Every structure of UniProt P11802
- Elsewhere: RCSB PDB 2W99 · PDBe 2W99 · UniProt P24385 · UniProt P11802
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