MolNFT v1 · #52516 · protein

GLC(BETA-1-3)GLC disaccharide in -1 and -2 sites of laminarinase 16A from phanerochaete chrysosporium

2W39 · Putative laminarinase: “GLC(BETA-1-3)GLC disaccharide in -1 and -2 sites of laminarinase 16A from phanerochaete chrysosporium”. X-ray diffraction, 3 ligands (LGC, BGC, NAG), 1 pocket (best druggability 0.57). MolNFT v1 #52516 on…

PDB: 2W39
Type: protein
Length: 298 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative laminarinase
EC: 3.2.1.6
UniProt: Q874E3
Ligands: LGC, BGC, NAG
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative laminarinase (EC 3.2.1.6)	protein	298	21% helix, 39% strand	Q874E3

Ligands and binding sites

LGC · D-glucono-1,5-lactone · ligand · chains A
BGC · beta-D-glucopyranose · sugar · 2 copies · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	242	0.57	0.79	38	BGC, LGC

Modifications

Observed in the structure: 4 disulfide, 1 glycan (disulfide, N-glycosylation).

Compared structures

2W39 · Glc(beta-1-3)Glc disaccharide in -1 and -2 sites of Laminarinase 16A from Phanerochaete… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q874E3
Elsewhere: RCSB PDB 2W39 · PDBe 2W39 · UniProt Q874E3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.