MolNFT v1 · #52318 · protein
Cellvibrio japonicus mannanase CJMAN26C GAL1MAN4-bound form
2VX6: “Cellvibrio japonicus mannanase CJMAN26C GAL1MAN4-bound form”. X-ray diffraction, 3 ligands (BMA, GLA, NA), 1 pocket (best druggability 0.52). MolNFT v1 #52318 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2VX6
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellvibrio japonicus mannanase CJMAN26C
- EC
- 3.2.1.-
- Ligands
- BMA, GLA, NA
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cellvibrio japonicus mannanase CJMAN26C (EC 3.2.1.-) | protein | 367 | 39% helix, 15% strand | — |
Ligands and binding sites
- BMA · beta-D-mannopyranose · sugar · 4 copies · chains A
- GLA · alpha-D-galactopyranose · sugar · chains A
- NA · Sodium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 259 | 0.52 | 0.75 | 27 | BMA |
Compared structures
- 2VX6 · CELLVIBRIO JAPONICUS MANNANASE CJMAN26C Gal1Man4-BOUND FORM · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2VX6 · PDBe 2VX6
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