MolNFT v1 · #52241 · protein
Crystal structure of codakine in complex with biantennary nonasaccharide at 1.7A resolution
2VUZ: “Crystal structure of codakine in complex with biantennary nonasaccharide at 1.7A resolution”. X-ray diffraction, 4 ligands (NAG, MAN, BMA). MolNFT v1 #52241 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2VUZ
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Codakine
- UniProt
- Q3KVL7
- Ligands
- NAG, MAN, BMA, CA
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Codakine | protein | 129 | 18% helix, 36% strand | Q3KVL7 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide, 1 modified (disulfide, hydroxylation).
Compared structures
- 2VUZ · Crystal structure of Codakine in complex with biantennary nonasaccharide at 1.7A… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3KVL7
- Elsewhere: RCSB PDB 2VUZ · PDBe 2VUZ · UniProt Q3KVL7
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