MolNFT v1 · #52117 · protein
The structure of the zinc finger from the human spliceosomal protein U1C
2VRD · U1 small nuclear ribonucleoprotein C: “The structure of the zinc finger from the human spliceosomal protein U1C”. Solution nmr, 1 ligand (ZN), 1 pocket (best druggability 0.53). MolNFT v1 #52117 on GenesisL1: 3D structure, binding…
- PDB
- 2VRD
- Type
- protein
- Length
- 61 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- U1 small nuclear ribonucleoprotein C
- UniProt
- P09234
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.53
Structure
solution nmr · 1 distinct chain · 38% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U1 small nuclear ribonucleoprotein C | protein | 61 | 38% helix, 7% strand | P09234 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 209 | 0.53 | 0.77 | 22 | empty |
Compared structures
- 2VRD · The structure of the zinc finger from the human spliceosomal protein U1C · the same entry in another collection · chain A against A, TM-score 1.00
- P09234 · AlphaFold monomer V2.0 prediction for U1 small nuclear ribonucleoprotein C (P09234) · a predicted model of the same protein · chain A against A, TM-score 0.50
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09234
- Elsewhere: RCSB PDB 2VRD · PDBe 2VRD · UniProt P09234
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