MolNFT v1 · #51712 · protein

Low temperature structure of P22 tailspike protein fragment (109-666)

2VFM · Bifunctional tail protein: “Low temperature structure of P22 tailspike protein fragment (109-666)”. X-ray diffraction, 2 ligands (CA, SO4), 3 pockets (best druggability 0.59). MolNFT v1 #51712 on GenesisL1: 3D structure, binding…

PDB: 2VFM
Type: protein
Length: 555 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bifunctional tail protein
EC: 3.2.1.-
UniProt: P12528
Ligands: CA, SO4
Pockets: 3 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bifunctional tail protein (EC 3.2.1.-)	protein	555	8% helix, 42% strand	P12528

Ligands and binding sites

CA · Calcium ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
GOL · Glycerol · additive · 11 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	310	0.59	0.77	35	GOL
2	98	0.35	0.74	17	GOL
3	84	0.30	0.73	18	empty

Compared structures

2VFM · Low Temperature Structure of P22 Tailspike Protein Fragment (109-666) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P12528
Elsewhere: RCSB PDB 2VFM · PDBe 2VFM · UniProt P12528

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