MolNFT v1 · #51554 · protein

Ftsz pseudomonas aeruginosa GDP

2VAW · Cell division protein ftsz: “Ftsz pseudomonas aeruginosa GDP”. X-ray diffraction, 1 ligand (GDP), 2 pockets (best druggability 0.54). MolNFT v1 #51554 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2VAW
Type: protein
Length: 315 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell division protein ftsz
UniProt: P47204
Ligands: GDP
Pockets: 2 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cell division protein ftsz	protein	315	44% helix, 22% strand	P47204

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.54	0.79	27	empty
2	151	0.50	0.79	34	GDP

Compared structures

2VAW · FtsZ Pseudomonas aeruginosa GDP · the same entry in another collection · chain A against A, TM-score 1.00
P47204 · AlphaFold monomer V2.0 prediction for cell division protein ftsz (P47204) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P47204
Elsewhere: RCSB PDB 2VAW · PDBe 2VAW · UniProt P47204

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