MolNFT v1 · #51543 · RNA
Crystal structure of an escherichia COLI trnagly microhelix at 2.0 ångström resolution
2VAL · 5'-R(*GP*CP*GP*GP*GP*AP*AP)-3': “Crystal structure of an escherichia COLI trnagly microhelix at 2.0 ångström resolution”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #51543 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2VAL
- Type
- RNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*CP*GP*GP*GP*AP*AP)-3'; 5'-R(*UP*UP*CP*CP*CP*GP*CP)-3'
- Ligands
- MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-R(*GP*CP*GP*GP*GP*AP*AP)-3' | rna | 7 | — | — |
| C, D | 5'-R(*UP*UP*CP*CP*CP*GP*CP)-3' | rna | 7 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
6 interfaces between chains.
- A–C · 354 Ų buried · 41 hydrogen bonds · nucleic-nucleic
- B–D · 346 Ų buried · 40 hydrogen bonds · nucleic-nucleic
- A–B · 121 Ų buried · 2 hydrogen bonds · nucleic-nucleic
- C–D · 111 Ų buried · 5 hydrogen bonds · nucleic-nucleic
- A–D · 67 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 2VAL · Crystal structure of an Escherichia coli tRNAGly microhelix at 2.0 Angstrom resolution · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2VAL · PDBe 2VAL
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