Research workbench
Crystal structure of an escherichia COLI trnagly microhelix at 2.0 ångström resolution
Analyse Crystal structure of an escherichia COLI trnagly microhelix at 2.0 ångström… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2VAL
- Type
- RNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*CP*GP*GP*GP*AP*AP)-3'; 5'-R(*UP*UP*CP*CP*CP*GP*CP)-3'
- Ligands
- MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-R(*GP*CP*GP*GP*GP*AP*AP)-3' | rna | 7 | — | — |
| C, D | 5'-R(*UP*UP*CP*CP*CP*GP*CP)-3' | rna | 7 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
6 interfaces between chains.
- A–C · 354 Ų buried · 41 hydrogen bonds · nucleic-nucleic
- B–D · 346 Ų buried · 40 hydrogen bonds · nucleic-nucleic
- A–B · 121 Ų buried · 2 hydrogen bonds · nucleic-nucleic
- C–D · 111 Ų buried · 5 hydrogen bonds · nucleic-nucleic
- A–D · 67 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 2VAL · Crystal structure of an Escherichia coli tRNAGly microhelix at 2.0 Angstrom resolution · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2VAL · PDBe 2VAL
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