MolNFT v1 · #50956 · RNA
Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals
2TRA · Trnaasp: “Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals”. X-ray diffraction, 2 ligands (SPM, MG), 3 pockets (best druggability 0.65). MolNFT v1 #50956 on GenesisL1: 3D…
- PDB
- 2TRA
- Type
- RNA
- Length
- 73 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trnaasp
- Ligands
- SPM, MG
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trnaasp | rna | 73 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 723 | 0.65 | 0.75 | 31 | SPM |
| 2 | 233 | 0.48 | 0.75 | 18 | empty |
| 3 | 78 | 0.39 | 0.79 | 12 | empty |
Modifications
Observed in the structure: 8 modified (nucleotide modification).
Compared structures
- 2TRA · Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2TRA · PDBe 2TRA
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