MolNFT v1 · #50687 · protein
Solution structure of juvenile hormone binding protein from silkworm in complex with jh III
2RQF · Hemolymph juvenile hormone binding protein: “Solution structure of juvenile hormone binding protein from silkworm in complex with jh III”. Solution nmr, 1 ligand (JH3), 1 pocket (best druggability 0.85). MolNFT v1 #50687 on…
- PDB
- 2RQF
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemolymph juvenile hormone binding protein
- UniProt
- Q9U556
- Ligands
- JH3
- Pockets
- 1 · best druggability 0.85
Structure
solution nmr · 1 distinct chain · 24% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemolymph juvenile hormone binding protein | protein | 227 | 24% helix, 40% strand | Q9U556 |
Ligands and binding sites
- JH3 · methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 289 | 0.85 | 0.95 | 42 | JH3 |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2RQF · Solution structure of juvenile hormone binding protein from silkworm in complex with JH… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9U556
- Elsewhere: RCSB PDB 2RQF · PDBe 2RQF · UniProt Q9U556
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