MolNFT v1 · #50477 · protein

Crystal structure of L3MBTL1 protein

2RJD · LETHAL(3)MALIGNANT brain tumor-like protein: “Crystal structure of L3MBTL1 protein”. X-ray diffraction, 1 pocket (best druggability 0.72). MolNFT v1 #50477 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2RJD
Type: protein
Length: 321 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LETHAL(3)MALIGNANT brain tumor-like protein
UniProt: Q9Y468
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LETHAL(3)MALIGNANT brain tumor-like protein	protein	321	20% helix, 31% strand	Q9Y468

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	808	0.72	0.77	69	empty

Compared structures

2RJD · Crystal structure of L3MBTL1 protein · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y468 · AlphaFold monomer V2.0 prediction for LETHAL(3)MALIGNANT brain tumor- like protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y468
Elsewhere: RCSB PDB 2RJD · PDBe 2RJD · UniProt Q9Y468

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