MolNFT v1 · #49780 · protein
Crystal structure of salmonella effector protein sopa
2QYU · Secreted effector protein: “Crystal structure of salmonella effector protein sopa”. X-ray diffraction, 1 ligand (PO4), 5 pockets (best druggability 0.52). MolNFT v1 #49780 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2QYU
- Type
- protein
- Length
- 620 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Secreted effector protein
- UniProt
- Q8ZNR3
- Ligands
- PO4
- Pockets
- 5 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Secreted effector protein | protein | 620 | 48% helix, 9% strand | Q8ZNR3 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
- B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 235 | 0.52 | 0.76 | 35 | empty |
| 2 | 170 | 0.45 | 0.75 | 21 | empty |
| 3 | 69 | 0.44 | 0.82 | 21 | empty |
| 4 | 100 | 0.34 | 0.74 | 20 | B3P |
| 5 | 51 | 0.27 | 0.75 | 14 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZNR3
- Elsewhere: RCSB PDB 2QYU · PDBe 2QYU · UniProt Q8ZNR3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.