MolNFT v1 · #49628 · protein
Crystal structure of the NADP+-bound FAD-containing fnr-like module of human methionine synthase reductase
2QTZ: “Crystal structure of the NADP+-bound FAD-containing fnr-like module of human methionine synthase reductase”. X-ray diffraction, 2 ligands (FAD, NAP), 3 pockets (best druggability 0.63). MolNFT v1 #49628 on GenesisL1: 3D structure…
- PDB
- 2QTZ
- Type
- protein
- Length
- 447 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methionine synthase reductase
- EC
- 1.16.1.8
- UniProt
- Q9UBK8
- Ligands
- FAD, NAP
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine synthase reductase (EC 1.16.1.8) | protein | 447 | 35% helix, 21% strand | Q9UBK8 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 448 | 0.63 | 0.77 | 52 | FAD, NAP |
| 2 | 62 | 0.32 | 0.76 | 15 | empty |
| 3 | 50 | 0.27 | 0.74 | 15 | empty |
Modifications
Observed in the structure: 2 modified (oxidation).
Compared structures
- 2QTZ · Crystal Structure of the NADP+-bound FAD-containing FNR-like Module of Human Methionine… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBK8 · AlphaFold monomer V2.0 prediction for methionine synthase reductase (Q9UBK8) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBK8
- Elsewhere: RCSB PDB 2QTZ · PDBe 2QTZ · UniProt Q9UBK8
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