MolNFT v1 · #49519 · protein
JMJD2A hybrid tudor domains
2QQR · Jmjc domain-containing histone demethylation protein 3A: “JMJD2A hybrid tudor domains”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #49519 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2QQR
- Type
- protein
- Length
- 236 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Jmjc domain-containing histone demethylation protein 3A
- EC
- 1.14.11.-
- UniProt
- O75164
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Jmjc domain-containing histone demethylation protein 3A (EC 1.14.11.-) | protein | 118 | 8% helix, 52% strand | O75164 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 795 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 2QQR · JMJD2A hybrid tudor domains · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75164
- Elsewhere: RCSB PDB 2QQR · PDBe 2QQR · UniProt O75164
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